PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235723.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 499aa    MW: 55312.3 Da    PI: 5.2947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235723.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13353399455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  XP_008235723.1 353 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 399
                     799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-4449232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-14352403No hitNo description
SuperFamilySSF474592.49E-18352418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18353418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10353399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGEKFWVNEE DRVMVESVLG TEACQFLTSL VSENVFTDLV RPPGKLGVQQ GLSQLVKGSN  60
WNYAIFWQVV GSKSGGSALI WGDGHCRDTK DGGVAGENSS LDGSFEGVQK KEEVKKWVLE  120
KLHACFGGLD EGYARRLDGV SDVEMFYLTS MYFAFQLDSH SGPGESYKSG KSIWVSDVGG  180
CLHHYQSRSY LARLAGFQTV VFVPMKSGVV ELGSVKANPE EQNLVNMVRN LFGESSSVQA  240
KAFPMIFGRE LSLGGPKSQP INIAFSPKIE EDSTFPPESF ELQSVGTSNG CQSEDSEVKL  300
FPQLNQMMVG GFSAPTIVSS SELPKDESSA QIDERKPRKR GRKPANGREE PLNHVEAERQ  360
RREKLNQRFY ALRAVVPNIS KMDKASLLGD AITYITDLQM KIRVMETENQ MGNNNQKQFP  420
VPEIDFQERH EDAVVRMNCP LDSHPVSEVI NTLREHKIVA QESNVSITDN DKVIHTFSIP  480
TEGGDAEQLK EKLVASLSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-16482329192Transcription factor MYC3
4rqw_B1e-16482329192Transcription factor MYC3
4rs9_A1e-16482329192Transcription factor MYC3
4yz6_A1e-16482329192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334342RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894060.0KP689406.1 Prunus pseudocerasus isolate Unigene16868 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235723.10.0PREDICTED: transcription factor bHLH3
SwissprotO234871e-178BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A0U2QJ140.0A0A0U2QJ14_9R
STRINGPOPTR_0002s04310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-173bHLH family protein